Jurjen Duintjer Tebbens

Monograph

G. Meurant and J. Duintjer Tebbens: Krylov Methods for Nonsymmetric Linear Systems - From Theory to Computations , Springer Series in Computational Mathematics, volume 57, October 2020. ISBN 978-3-030-55250-3, 686 pages, 2020. (Errata: On page 204, the formula for the modulus of c_k is wrong. There must be squares in the norms in the numerator and denominator. On pages 240 and 241, there must be a minus sign in front of $\delta_1$ and $\varsigma_1$.)

Textbook

J. Duintjer Tebbens, I. Hnetynkova, M. Plesinger, Z. Strakos and P. Tichy: Analysis of Methods for Matrix Computations, Basic Methods (in Czech), Matfyzpress Prague, ISBN 978-80-7378-201-6, first edition, 2012, 328 p. This textbook was awarded the Jaroslav Jirsa price for the best textbook in the natural sciences and mathematics-physics of the Charles University in 2012.

Published and accepted papers on mathematics in international journals with impact factor

T. Smutny, V. Bernhauerova, L. Smutna, J. Duintjer Tebbens, P. Pavek: Expression Dynamics of Pregnane X Receptor-controlled Genes in 3D Primary Human Hepatocyte Spheroids , Archives of Toxicology, vol. 96, pp. 195--210, 2022.
J. Duintjer Tebbens and G. Meurant: On the Residual Norms, the Ritz Values and the Harmonic Ritz Values that Can be Generated by Restarted GMRES , Numerical Algorithms, Vol. 84, nr. 4, pp. 1329--1352, 2020.
J. Duintjer Tebbens, C. Matonoha, A. Matthios and S. Papacek: On Parameter Estimation in an In Vitro Compartmental Model for Drug-induced Enzyme Production in Pharmacotherapy , Applications of Mathematics, vol. 64, no. 2, pp. 253-277, 2019.
J. Duintjer Tebbens, M. Azar, E. Friedmann, M. Lanzendoerfer and P. Pavek: Mathematical Models in the Description of Pregnane X Receptor-regulated Cytochrome P450 Enzyme Induction , International Journal of Molecular Sciences, vol. 19(6), 1785, 2018.
K. Du, J. Duintjer Tebbens and G. Meurant: Any Admissible Harmonic Ritz Value Set is Possible for GMRES , ETNA, vol. 47, pp. 37-56, 2017.
J. Duintjer Tebbens and G. Meurant: On the Convergence of QOR and QMR Krylov Methods for Solving Nonsymmetric Linear Systems , BIT, vol. 56, no. 1, pp. 77-97, 2016.
G. Meurant and J. Duintjer Tebbens: The Role Eigenvalues Play in Forming GMRES Residual Norms with Non-Normal Matrices , Numerical Algorithms, vol. 68, no. 1, pp. 143--165, 2015.
J. Duintjer Tebbens, G. Meurant, H. Sadok and Z. Strakos: On Investigating GMRES Convergence Using Unitary Matrices , Lin. Alg. Appl., vol. 450, pp. 83--107, 2014.
J. Duintjer Tebbens and M. Tuma: On Incremental Condition Estimators in the 2-Norm , SIAM J. Matrix Anal. Appl., vol. 35, no. 1, pp. 174--197, 2014.
J. Duintjer Tebbens and G. Meurant: Prescribing the Behavior of Early Terminating GMRES and Arnoldi Iterations , Numerical Algorithms, vol. 65, no. 1, pp. 69--90, 2014.
J. Duintjer Tebbens and G. Meurant: Any Ritz Value Behavior Is Possible for Arnoldi and for GMRES , SIAM J. Matrix Anal. Appl., vol. 33, no. 3, pp. 958--978, 2012.
J. Duintjer Tebbens and M. Tuma: Preconditioner Updates for Solving Sequences of Linear Systems in Matrix-free Environment , Num. Lin. Alg. Appl., vol. 17, pp. 997-1019, 2010.
K. J. Quint, S. Hartmann, J. Duintjer Tebbens and A. Meister: Iterative Solvers within Sequences of Large Linear Systems in Non-Linear Structural Mechanics , Z. Angew. Math. Mech., vol. 89, no. 9, pp. 711--728, 2009.
Ph. Birken, J. Duintjer Tebbens, A. Meister and M. Tuma: Preconditioner Updates Applied to CFD Model Problems , Applied Numerical Mathematics, vol. 58, no. 11, pp.1628--1641, 2008.
J. Duintjer Tebbens and M. Tuma: Improving Triangular Preconditioner Updates for Nonsymmetric Linear Systems , Lecture Notes in Computer Science vol. 4818 (proceedings of the 6th International Conference on Large-Scale Scientific Computations), pp. 737--744, 2008.
J. Duintjer Tebbens and M. Tuma: Efficient Preconditioning of Sequences of Nonsymmetric Linear Systems , SIAM J. Sci. Comput., vol. 29, no. 5, pp. 1918--1941, 2007.
J. Duintjer Tebbens and P. Schlesinger: Improving Implementation of Linear Discriminant Analysis for the High Dimension/Small Sample Size Problem , Computational Statistics and Data Analysis, vol. 52, no.1, pp. 423--437, 2007.

Published and accepted non-mathematical papers in international journals with impact factor
J. Marushka, J. Brokesova, Ch. Ogadah, A. Kashemi, J. Duintjer Tebbens and Z. Sklubalova: Milling of Pharmaceutical Powder Carrier Excipients: Application of Central Composite Design , Advanced Powder Technology, vol. 33, nr. 12, 103881, 2022.
J. Marushka, H. Hurychova, Z. Sklubalova and J. Duintjer Tebbens: Flow Equations for Free-Flowable Particle Fractions of Sorbitol for Direct Compression: An Exploratory Multiple Regression Analysis of Particle and Orifice Size Influence , Pharmaceutics, vol. 14, Nr. 8, 1653, 2022.
K. Hloch, M. Dosedel, J. Duintjer Tebbens, L. Zaloudkova, H. Medkova, J. Vlcek, T. Soukup and P. Pavek: Higher Risk of Cardiovascular Diseases in Rheumatoid Arthritis Patients Without Methotrexate Treatment , Frontiers in Pharmacology, vol. 12, 2021.
B. Vranikova, P. Svacinova, J. Marushka, O. Holas, J. Duintjer Tebbens and Z. Sklubalova: The Importance of the Coating Material Type and Amount in the Preparation of Liquisolid Systems Based on Neusilin US2 , European Journal of Pharmaceutical Sciences, vol. 165, 2021.
R. Karahoda, M. Robles, J. Marushka, J. Stranik, C. Abad, H. Horackova, J. Duintjer Tebbens, C. Vaillancourt, M. Kacerovsky and F. Staud: Prenatal Inflammation As A Link Between Placental Expression Signature Of Tryptophan Metabolism And Preterm Birth , Human Molecular Genetics, Vol. 30, Nr. 22, pp. 2053--2067. 2021.
J. Visek, M. Blaha, V. Blaha, M. Lasticova, M. Lanska, C. Andrys, J. Duintjer Tebbens, I. Igreja e Sa, K. Tripska, M. Vicen, I. Najmanova, P. Nachtigal: Monitoring of Up to 15 Years Effects of Lipoprotein Apheresis on Lipids, Biomarkers of Inflammation, and Soluble Endoglin in Familial Hypercholesterolemia Patients , Orphanet J. Rare Diseases, 16:110, 2021.
T. Soukup, I. Barvik, J. Nekvindova, J. Duintjer Tebbens, M. Dosedel, K. Hloch, S. Sembera, T. Veleta and P. Pavek: The Influence of Coffee Intake and Genetics on Adenosine Pathway in Rheumatoid Arthritis , Pharmacogenomics, vol. 21, nr. 11, pp. 735--749, 2020.
R. Karahoda, H. Horackova, P. Kastner, A. Matthios, L. Cerveny, R. Kucera, M. Kacerovsky, J. Duintjer Tebbens, A. Bonnin, C. Abad and F. Staud: Serotonin Homeostasis in the Materno-Fetal Interface at Term: Role of Transporters (SERT/SLC6A4 and OCT3/SLC22A3) and Monoamine Oxidase A (MAO-A) in Uptake and Degradation of Serotonin by Human and Rat Term Placenta , Acta Physiologica, vol. 229, nr. 4, 00:e13478, 2020.
E. Dvorackova, P. Pavek, B. Kovacova, J. Rychlickova, O. Suchopar, M. Hojny, J. Duintjer Tebbens and J. Vlcek: Is Computer-assisted Aminoglycoside Dosing Managed by a Pharmacist a Safety Tool of Pharmacotherapy? , Physiological Research, vol. 68, S87--S96, 2019.
L. Jiraskova, A. Ryska, J. Duintjer Tebbens, H. Hornychova, F. Cecka, F. Staud and L. Cerveny: Are ENT1/ENT1, NOTCH3, and miR-21 Reliable Prognostic Biomarkers in Patients with Resected Pancreatic Adenocarcinoma Treated with Adjuvant Gemcitabine Monotherapy? , Cancers vol. 11, no. 11, 1621, 2019.
T. Soukup, I. Barvik, J. Nekvindova, A. Kubena, J. Duintjer Tebbens, P. Pavek and M. Dosedel: Are Haplotypes in a Single MTX Pathway More Predictive for Response in Rheumatoid Arthritis Than in Different Pathways? , Pharmacogenomics vol. 19, no.5, 2018.
B. Vitverova, K. Blazickova, I. Najmanova, M. Vicen, R. Hyspler, E. Dolezelova, J. Duintjer Tebbens, C. Bernabeu, M. Perichacio and P. Nachtigal: Soluble Endoglin and Hypercholesterolemia Aggravates Endothelial and Vessel Wall Dysfunction in Mouse Aorta Atherosclerosis , Atherosclerosis vol. 217, pp. 15--25, 2018.
T. Belkina, N. Duvanova, A. Korolkova, J. Duintjer Tebbens and J. Vlcek: Antibiotic Use Practices by Pharmacy Staff: A Cross-Sectional Study in Saint-Petersburg, the Russian Federation , BMC Pharmacology and Toxicology vol. 18, no. 11, 2017.
T. Soukup, M. Dosedel, J. Nekvindova, A. Kubena, J. Duintjer Tebbens, J. Vlcek, P. Bradna, I. Barvik and P. Pavek: The Plausible Association of MTHFR and Adenosine A2a Receptor Polymorphisms with Nodules in Rheumatoid Arthritis Patients Treated with Methotrexate , Pharmacogenetics and Genomics, vol. 27, no. 2, pp.43--50, 2017.
M. El Zowalaty, T. Belkina, S. Bahashwan, J. Duintjer Tebbens, H. Abdel-Salam, A. Khalil, A. Noreddin, S. Daghriry, M. Gahtani, F. Madkhaly, N. Nohi, R. Khodari, R. Sharahili, K. Daghrery, M. Khormi, S. Habibah, B. Medrba, A. Gahtani, R. Hofdi, J. Zaid, A. Amshan, A. Alneami, and J. Vlcek: Knowledge, Awareness, and Attitudes Toward Antibiotic Use and Antimicrobial Resistance Among Saudi Population , International Journal of Clinical Pharmacy, vol. 38, no. 5, pp.1261--1268, 2016.
T. Smutny, J. Duintjer Tebbens, P. Pavek: Bioinformatic Analysis of MiRNAs Targeting the Key Nuclear Receptors Regulating CYP3A4 Gene Expression: The Challenge of the CYP3A4 ''Missing Heritability'' Enigma , Journal of Applied Biomedicine, vol. 13, no. 3, pp. 181--188, 2015.
T. Hendrychova, M. Vytrisalova, A. Alwarafi, J. Duintjer Tebbens,, H. Vankatova, S. Leal, A. Kubena, A. Smahelova, J. Vlcek: Fat-related and Fiber-related Diet Behavior Among Type 2 Diabetes Patients From Distinct Regions , Patient Preference and Adherence, vol. 9, pp. 319--325, 2015.
T. Belkina, D. Khojiev, M. Tillyashaykhov, Z. Tigay, M. Kudenov, J. Duintjer Tebbens and J. Vlcek: Delay in the Diagnosis and Treatment of Pulmonary Tuberculosis in Uzbekistan: A Cross-sectional Study , BMC Infectious Diseases, vol. 14, no. 624, 2014.

Other publications
J. Duintjer Tebbens, M. Lanzendoerfer, C. Matonoha and S. Papacek: Preconditioning for the integration of a spatiotemporal pharmacodynamic system , Proc. Appl. Math. Mech., vol. 22, no. 1, e202200268, pp. 1 - 6, 2023.
T. Belkina, N. Duvanova, A. Korolkova, J. Duintjer Tebbens and J. Vlcek: Antibiotic Use Practices By Pharmacy Staff: A Cross-Sectional Study in Saint-Petersburg, Russia , Pharmacoepidemiology and Drug Safety, vol. 25, Supplement S3, Abstract 380, 221 -- 222, 2016.
J. Kalina and J. Duintjer Tebbens: Algorithms for Regularized Linear Discriminant Analysis, Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Scitepress, Lissabon, pp. 128 -- 133, 2015.
J. Kalina, J. Duintjer Tebbens and A. Schlenker: Robustness of High-Dimensional Data Mining, Proceedings of ITAT 2014, Part II, V. Kurkova et al. (Eds.), Insitute of Computer Science AS CR, Prague, pp. 53 -- 60, 2014.
J. Kalina, Z. Valenta and J. Duintjer Tebbens: Computation of Regularized Linear Discriminant Analysis, Proceedings of COMPSTAT 2014, M. Gilli, G. Gonzalez-Rodrigues, A. Nieto-Reyes (Eds.), Universite de Geneve, pp. 1 -- 8, 2014.
J. Kalina and J. Duintjer Tebbens: Metody pro redukci dimenze v mnohorozmerne statistice a jejich vypocet (in Czech), Informacni bulletin Ceske statisticke spolecnosti, vol. 25, no. 1, pp. 13 -- 29, 2014.
K. J. Quint, S. Hartmann, J. Duintjer Tebbens and A. Meister: Efficient Finite Element Analysis of Inelastic Structures with Iterative Solvers , Proc. Appl. Math. Mech., vol. 8, no. 1, pp. 10331-10332, 2008.
Ph. Birken, J. Duintjer Tebbens, A. Meister and M. Tuma: Updating Preconditioners for Permuted Nonsymmetric Linear Systems , Proc. Appl. Math. Mech., vol. 7, no. 1, pp. 1022101-1022102, 2007.
J. Duintjer Tebbens and M. Tuma: Preconditioner Updates for Solving Sequences of Large and Sparse Nonsymmetric Linear Systems , technical report no. 940, Institute of Computer Science, Academy of Sciences of the Czech Republic, August 2005.
J. Duintjer Tebbens and C. Matonoha: Fiedler Anniversary Honored , IMAGE, Vol. 37, pp. 7, 2006.
J. Duintjer Tebbens: GMRES Acceleration Analysis for a Convection Diffusion Model Problem , in ,,Algoritmy 2005'', Slovak University of Technology, Bratislava, pp. 240--249, 2005.
J. Duintjer Tebbens: An Application of the Sherman-Morrison Formula to the GMRES Method , in ,,Conjugate Gradient Algorithms and Finite Element Methods'', Springer-Verlag, Berlin, pp. 69--92, 2004.
J. Duintjer Tebbens: Modern Methods for Solving Linear Systems , Ph.D. Thesis, Matematicko-fyzikalni fakulta, Karlova Univerzita, Prague, 2004.
J. Duintjer Tebbens and J. Zitko: Adaptivni Predpodmineni Metody GMRES (in Czech), in ,,Programy a algoritmy numericke matematiky 11'', Matematicky Ustav AV CR, Prague, pp. 293--311, 2002.
J. Duintjer Tebbens and J. Zitko: Comparing the QMR and the Augmented GMRES Algorithm , in WDS 01 Proceedings of contributed papers, J. Safrankova, ed., matfyzpress, Prague, pp. 156--161, 2001.
J. Duintjer Tebbens: Ueberlagerungstheoretische Aspekte in der Funktionentheorie (in German), Diplomarbeit (Master Thesis), Fakultaet fuer Mathematik, Physik und Naturwissenschaften, RWTH-Aachen, Aachen, 2000.

Submitted papers and papers in preparation

Monograph

Textbook

Published and accepted papers on mathematics in international journals with impact factor

Published and accepted non-mathematical papers in international journals with impact factor

Other publications

Submitted papers and papers in preparation